HL_6D8M_006

3D structure

PDB id

6D8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A125U/G126U

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUCUU

Length

5 nucleotides

Bulged bases

6D8M|1|B|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D8M_006 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3744

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6D8M|1|B|A|235
6D8M|1|B|U|236
6D8M|1|B|C|237
6D8M|1|B|U|238
6D8M|1|B|U|239

Current chains

Chain B

Group I self-splicing intron

Nearby chains