HL_6D90_037
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUUGAGGUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D90_037 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3287
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6D90|1|3|C|31
6D90|1|3|C|32
6D90|1|3|U|33
6D90|1|3|U|34
6D90|1|3|G|35
6D90|1|3|A|36
6D90|1|3|G|37
6D90|1|3|G|38
6D90|1|3|U|39
6D90|1|3|G|40
6D90|1|3|G|41
Current chains
- Chain 3
- P-tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain RR
- uS9
- Chain jj
- eRF1
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