HL_6D90_072

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6D90|1|5|G|1981, 6D90|1|5|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_072 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4892

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6D90|1|5|C|1978
6D90|1|5|A|1979
6D90|1|5|U|1980
6D90|1|5|G|1981
6D90|1|5|G|1982
6D90|1|5|A|1983
6D90|1|5|A|1984
6D90|1|5|G|1985
6D90|1|5|U|1986
6D90|1|5|C|1987
6D90|1|5|G|1988

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain jj

eRF1

Chain t

uL11