HL_6D90_111
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6D90|1|5|G|4694, 6D90|1|5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D90_111 not in the Motif Atlas
- Homologous match to HL_5TBW_067
- Geometric discrepancy: 0.1423
- The information below is about HL_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6D90|1|5|C|4688
6D90|1|5|U|4689
6D90|1|5|G|4690
6D90|1|5|A|4691
6D90|1|5|A|4692
6D90|1|5|C|4693
6D90|1|5|G|4694
6D90|1|5|C|4695
6D90|1|5|C|4696
6D90|1|5|U|4697
6D90|1|5|C|4698
6D90|1|5|U|4699
6D90|1|5|A|4700
6D90|1|5|A|4701
6D90|1|5|G|4702
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- uL6
- Chain O
- uL13
- Chain m
- eL40
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