HL_6D90_120

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

6D90|1|8|U|110, 6D90|1|8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_120 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.3262

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6D90|1|8|C|107
6D90|1|8|A|108
6D90|1|8|C|109
6D90|1|8|U|110
6D90|1|8|U|111
6D90|1|8|G|112

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain j

eL37

Chain l

eL39