HL_6D90_123

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

6D90|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_123 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3687

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6D90|1|2|U|461
6D90|1|2|C|462
6D90|1|2|C|463
6D90|1|2|A|464
6D90|1|2|A|465
6D90|1|2|G|466
6D90|1|2|G|467
6D90|1|2|A|468

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain V

uL14