HL_6D90_140

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAGCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_140 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3747

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6D90|1|5|G|2457
6D90|1|5|C|2458
6D90|1|5|G|2459
6D90|1|5|A|2460
6D90|1|5|G|2461
6D90|1|5|C|2462
6D90|1|5|G|2463
6D90|1|5|C|2464

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain j

eL37