HL_6D90_144

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_144 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.283

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6D90|1|5|A|3723
6D90|1|5|A|3724
6D90|1|5|G|3725
6D90|1|5|A|3726
6D90|1|5|A|3727
6D90|1|5|A|3728
6D90|1|5|U|3729
6D90|1|5|U|3730

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

uL1

Chain i

eL36

Chain o

eL42