HL_6D90_149
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCAGCUAGCUGCG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D90_149 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3321
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6D90|1|8|C|45
6D90|1|8|G|46
6D90|1|8|C|47
6D90|1|8|A|48
6D90|1|8|G|49
6D90|1|8|C|50
6D90|1|8|U|51
6D90|1|8|A|52
6D90|1|8|G|53
6D90|1|8|C|54
6D90|1|8|U|55
6D90|1|8|G|56
6D90|1|8|C|57
6D90|1|8|G|58
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- eL23
- Chain h
- eL35
- Chain j
- eL37
- Chain l
- eL39
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