HL_6D90_151

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_151 not in the Motif Atlas

Homologous match to HL_8P9A_209

Geometric discrepancy: 0.209

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6D90|1|2|A|957
6D90|1|2|G|958
6D90|1|2|G|959
6D90|1|2|U|960
6D90|1|2|G|961
6D90|1|2|A|962
6D90|1|2|A|963
6D90|1|2|A|964
6D90|1|2|U|965
6D90|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain GG

uS7

Chain PP

uS11