HL_6D90_152

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6D90|1|2|U|1300, 6D90|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_152 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2723

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6D90|1|2|A|1295
6D90|1|2|U|1296
6D90|1|2|U|1297
6D90|1|2|G|1298
6D90|1|2|A|1299
6D90|1|2|U|1300
6D90|1|2|A|1301
6D90|1|2|G|1302
6D90|1|2|C|1303
6D90|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain QQ

uS19

Chain ee

eS29

Chain gg

eS31