HL_6D9J_003

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6D9J|1|2|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3687

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6D9J|1|2|G|156
6D9J|1|2|U|157
6D9J|1|2|A|158
6D9J|1|2|A|159
6D9J|1|2|U|160
6D9J|1|2|U|161
6D9J|1|2|C|162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain ZZ

eS24