HL_6D9J_007

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

6D9J|1|2|C|381, 6D9J|1|2|G|385

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_007 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.284

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6D9J|1|2|G|377
6D9J|1|2|U|378
6D9J|1|2|C|379
6D9J|1|2|G|380
6D9J|1|2|C|381
6D9J|1|2|C|382
6D9J|1|2|G|383
6D9J|1|2|U|384
6D9J|1|2|G|385
6D9J|1|2|C|386
6D9J|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain JJ

eS8

Chain MM

uS17