HL_6D9J_009

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6D9J|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_009 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.2473

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D9J|1|2|C|441
6D9J|1|2|C|442
6D9J|1|2|U|443
6D9J|1|2|G|444
6D9J|1|2|A|445
6D9J|1|2|G|446
6D9J|1|2|A|447
6D9J|1|2|A|448
6D9J|1|2|A|449
6D9J|1|2|C|450
6D9J|1|2|G|451
6D9J|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain JJ

eS8