HL_6D9J_011

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6D9J|1|2|A|500, 6D9J|1|2|C|502, 6D9J|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5696

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6D9J|1|2|C|498
6D9J|1|2|G|499
6D9J|1|2|A|500
6D9J|1|2|C|501
6D9J|1|2|C|502
6D9J|1|2|C|503
6D9J|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain ZZ

eS24