HL_6D9J_019

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_019 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3352

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6D9J|1|2|A|957
6D9J|1|2|G|958
6D9J|1|2|G|959
6D9J|1|2|U|960
6D9J|1|2|G|961
6D9J|1|2|A|962
6D9J|1|2|A|963
6D9J|1|2|A|964
6D9J|1|2|U|965
6D9J|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 4

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain PP

uS11