HL_6D9J_032
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6D9J|1|2|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_032 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.458
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6D9J|1|2|A|1614
6D9J|1|2|U|1615
6D9J|1|2|U|1616
6D9J|1|2|G|1617
6D9J|1|2|C|1618
6D9J|1|2|A|1619
6D9J|1|2|A|1620
6D9J|1|2|U|1621
6D9J|1|2|U|1622
6D9J|1|2|A|1623
6D9J|1|2|U|1624
6D9J|1|2|U|1625
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain QQ
- uS19
- Chain TT
- uS13
- Chain UU
- eS19
- Chain ee
- eS29
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