HL_6D9J_036
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAUUGGUAGAC
- Length
- 13 nucleotides
- Bulged bases
- 6D9J|1|3|U|16, 6D9J|1|3|U|17, 6D9J|1|3|G|18, 6D9J|1|3|G|19, 6D9J|1|3|U|20, 6D9J|1|3|G|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_036 not in the Motif Atlas
- Homologous match to HL_1QTQ_001
- Geometric discrepancy: 0.568
- The information below is about HL_1QTQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.4
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
6D9J|1|3|G|12
6D9J|1|3|G|13
6D9J|1|3|A|14
6D9J|1|3|A|15
6D9J|1|3|U|16
6D9J|1|3|U|17
6D9J|1|3|G|18
6D9J|1|3|G|19
6D9J|1|3|U|20
6D9J|1|3|A|21
6D9J|1|3|G|22
6D9J|1|3|A|23
6D9J|1|3|C|24
Current chains
- Chain 3
- P-site tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL11
- Chain o
- eL42
Coloring options: