HL_6D9J_058

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6D9J|1|5|C|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_058 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.2468

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6D9J|1|5|U|1317
6D9J|1|5|C|1318
6D9J|1|5|U|1319
6D9J|1|5|U|1320
6D9J|1|5|G|1321
6D9J|1|5|A|1322
6D9J|1|5|A|1323
6D9J|1|5|A|1324
6D9J|1|5|C|1325
6D9J|1|5|A|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32