HL_6D9J_066

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6D9J|1|5|A|1630, 6D9J|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_066 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.1713

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6D9J|1|5|G|1627
6D9J|1|5|C|1628
6D9J|1|5|G|1629
6D9J|1|5|A|1630
6D9J|1|5|A|1631
6D9J|1|5|A|1632
6D9J|1|5|G|1633
6D9J|1|5|A|1634
6D9J|1|5|C|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain j

eL37