HL_6D9J_067

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6D9J|1|5|C|1676, 6D9J|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_067 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.4165

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6D9J|1|5|C|1675
6D9J|1|5|C|1676
6D9J|1|5|U|1677
6D9J|1|5|C|1678
6D9J|1|5|A|1679
6D9J|1|5|G|1680

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

uL15

Chain b

eL29