HL_6D9J_084

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_084 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.194

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6D9J|1|5|G|2664
6D9J|1|5|U|2665
6D9J|1|5|U|2666
6D9J|1|5|C|2667
6D9J|1|5|G|2668
6D9J|1|5|C|2669
6D9J|1|5|C|2670
6D9J|1|5|C|2671

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain c

eL30

Chain p

eL43