HL_6D9J_097
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6D9J|1|5|A|4214, 6D9J|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_097 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.2751
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6D9J|1|5|U|4210
6D9J|1|5|C|4211
6D9J|1|5|A|4212
6D9J|1|5|A|4213
6D9J|1|5|A|4214
6D9J|1|5|C|4215
6D9J|1|5|G|4216
6D9J|1|5|G|4217
6D9J|1|5|U|4218
6D9J|1|5|A|4219
6D9J|1|5|A|4220
6D9J|1|5|C|4221
6D9J|1|5|G|4222
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- uL16
- Chain T
- eL21
- Chain b
- eL29
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