HL_6D9J_103
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_103 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.1698
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6D9J|1|5|C|4417
6D9J|1|5|G|4418
6D9J|1|5|U|4419
6D9J|1|5|U|4420
6D9J|1|5|C|4421
6D9J|1|5|A|4422
6D9J|1|5|U|4423
6D9J|1|5|A|4424
6D9J|1|5|G|4425
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain I
- uL16
- Chain m
- eL40
Coloring options: