HL_6D9J_110

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCCG

Length

5 nucleotides

Bulged bases

6D9J|1|5|C|4777

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_110 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2152

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6D9J|1|5|C|4775
6D9J|1|5|G|4776
6D9J|1|5|C|4777
6D9J|1|5|C|4859
6D9J|1|5|G|4860

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14

Chain O

uL13