HL_6D9J_119

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6D9J|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_119 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3779

The information below is about HL_4LX6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6D9J|1|8|G|121
6D9J|1|8|G|122
6D9J|1|8|U|123
6D9J|1|8|U|124
6D9J|1|8|C|125
6D9J|1|8|C|126
6D9J|1|8|U|127
6D9J|1|8|C|128
6D9J|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

eL23