HL_6D9J_124

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCAGGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_124 not in the Motif Atlas

Geometric match to HL_8VTW_056

Geometric discrepancy: 0.3015

The information below is about HL_8VTW_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6D9J|1|2|A|415
6D9J|1|2|U|416
6D9J|1|2|C|417
6D9J|1|2|A|418
6D9J|1|2|G|419
6D9J|1|2|G|420
6D9J|1|2|G|421
6D9J|1|2|U|422

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain KK

uS4

Chain MM

uS17

Chain XX

uS8

Chain YY

uS12