HL_6D9J_138

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_138 not in the Motif Atlas

Homologous match to HL_8CRE_058

Geometric discrepancy: 0.2416

The information below is about HL_8CRE_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6D9J|1|5|U|4321
6D9J|1|5|G|4322
6D9J|1|5|A|4323
6D9J|1|5|A|4324
6D9J|1|5|A|4325
6D9J|1|5|G|4326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain o

eL42