HL_6DDD_001

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACGAUAU

Length

8 nucleotides

Bulged bases

6DDD|1|1|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_001 not in the Motif Atlas

Geometric match to HL_4P5J_004

Geometric discrepancy: 0.2999

The information below is about HL_4P5J_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

6DDD|1|1|G|67
6DDD|1|1|A|68
6DDD|1|1|C|69
6DDD|1|1|G|70
6DDD|1|1|A|71
6DDD|1|1|U|72
6DDD|1|1|A|73
6DDD|1|1|U|74

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23

Chain K

50S ribosomal protein L29