HL_6DDD_057

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

6DDD|1|1|U|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_057 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3629

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6DDD|1|1|A|2498
6DDD|1|1|G|2499
6DDD|1|1|U|2500
6DDD|1|1|U|2501
6DDD|1|1|C|2502
6DDD|1|1|A|2503
6DDD|1|1|C|2504
6DDD|1|1|A|2505
6DDD|1|1|U|2506

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain Y

50S ribosomal protein L16