HL_6DLQ_003

3D structure

PDB id

6DLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAGAAGC

Length

9 nucleotides

Bulged bases

6DLQ|1|A|G|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DLQ_003 not in the Motif Atlas

Geometric match to HL_6DLR_003

Geometric discrepancy: 0.0886

The information below is about HL_6DLR_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77193.1

Basepair signature

cWW-tWH-tWH-F-F

Number of instances in this motif group

4

Unit IDs

6DLQ|1|A|G|82
6DLQ|1|A|A|83
6DLQ|1|A|U|84
6DLQ|1|A|A|85
6DLQ|1|A|G|86
6DLQ|1|A|A|87
6DLQ|1|A|A|88
6DLQ|1|A|G|89
6DLQ|1|A|C|90

Current chains

Chain A

PRPP Riboswitch

Nearby chains