HL_6DNC_014

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_014 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.2303

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6DNC|1|A|G|617
6DNC|1|A|C|618
6DNC|1|A|U|619
6DNC|1|A|C|620
6DNC|1|A|A|621
6DNC|1|A|A|622
6DNC|1|A|C|623

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S16

Chain QA

30S ribosomal protein S4