HL_6DNC_016

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_016 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1026

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6DNC|1|A|C|726
6DNC|1|A|G|727
6DNC|1|A|A|728
6DNC|1|A|A|729
6DNC|1|A|G|730
6DNC|1|A|G|731

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S15

Chain EB

30S ribosomal protein S18

Chain HB

30S ribosomal protein S21