HL_6DNC_021

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

6DNC|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.3201

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6DNC|1|A|G|963
6DNC|1|A|A|964
6DNC|1|A|U|965
6DNC|1|A|G|966
6DNC|1|A|C|967
6DNC|1|A|A|968
6DNC|1|A|A|969
6DNC|1|A|C|970
6DNC|1|A|G|971
6DNC|1|A|C|972

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S14

Chain LA

Transfer RNA; tRNA

Chain MA

Peptide chain release factor 1

Chain VA

30S ribosomal protein S9

Chain WA

30S ribosomal protein S10

Chain ZA

30S ribosomal protein S13