HL_6DNC_024

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6DNC|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.154

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6DNC|1|A|G|1089
6DNC|1|A|U|1090
6DNC|1|A|U|1091
6DNC|1|A|A|1092
6DNC|1|A|A|1093
6DNC|1|A|G|1094
6DNC|1|A|U|1095
6DNC|1|A|C|1096

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain HB

30S ribosomal protein S21

Chain OA

30S ribosomal protein S2

Chain TA

30S ribosomal protein S7