HL_6DNC_031

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_031 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.2841

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6DNC|1|A|G|1515
6DNC|1|A|G|1516
6DNC|1|A|G|1517
6DNC|1|A|A|1518
6DNC|1|A|A|1519
6DNC|1|A|C|1520

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA