HL_6DNC_038

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_038 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.2574

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

6DNC|1|B|C|225
6DNC|1|B|A|226
6DNC|1|B|A|227
6DNC|1|B|C|228
6DNC|1|B|C|229
6DNC|1|B|G|230

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L15