HL_6DNC_068

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6DNC|1|B|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DNC_068 not in the Motif Atlas

Geometric match to HL_8C3A_196

Geometric discrepancy: 0.3229

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

6DNC|1|B|C|1533
6DNC|1|B|U|1534
6DNC|1|B|A|1535
6DNC|1|B|C|1536
6DNC|1|B|G|1537
6DNC|1|B|G|1538

Current chains

Chain B

23S ribosomal RNA

Nearby chains