HL_6DNC_080
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6DNC|1|B|A|2030, 6DNC|1|B|A|2031, 6DNC|1|B|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_080 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1739
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6DNC|1|B|G|2027
6DNC|1|B|U|2028
6DNC|1|B|G|2029
6DNC|1|B|A|2030
6DNC|1|B|A|2031
6DNC|1|B|G|2032
6DNC|1|B|A|2033
6DNC|1|B|U|2034
6DNC|1|B|G|2035
6DNC|1|B|C|2036
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain FA
- 50S ribosomal protein L32
- Chain G
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L21
Coloring options: