HL_6DNC_096
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6DNC|1|B|G|2751, 6DNC|1|B|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_096 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.1141
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6DNC|1|B|C|2745
6DNC|1|B|U|2746
6DNC|1|B|G|2747
6DNC|1|B|A|2748
6DNC|1|B|A|2749
6DNC|1|B|A|2750
6DNC|1|B|G|2751
6DNC|1|B|C|2752
6DNC|1|B|A|2753
6DNC|1|B|U|2754
6DNC|1|B|C|2755
6DNC|1|B|U|2756
6DNC|1|B|A|2757
6DNC|1|B|A|2758
6DNC|1|B|G|2759
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L6
- Chain JA
- 50S ribosomal protein L36
- Chain N
- 50S ribosomal protein L13
Coloring options: