HL_6DNC_106
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_106 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1083
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 50
Unit IDs
6DNC|1|LA|G|31
6DNC|1|LA|C|32
6DNC|1|LA|U|33
6DNC|1|LA|C|34
6DNC|1|LA|A|35
6DNC|1|LA|U|36
6DNC|1|LA|A|37
6DNC|1|LA|A|38
6DNC|1|LA|C|39
Current chains
- Chain LA
- tRNA(fMet)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Transfer RNA; tRNA
- Chain KA
- mRNA
- Chain MA
- Peptide chain release factor 1
- Chain VA
- 30S ribosomal protein S9
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