HL_6DNC_112
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCGGACAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DNC_112 not in the Motif Atlas
- Homologous match to HL_5J7L_219
- Geometric discrepancy: 0.2294
- The information below is about HL_5J7L_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50860.2
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6DNC|1|B|G|2304
6DNC|1|B|U|2305
6DNC|1|B|C|2306
6DNC|1|B|G|2307
6DNC|1|B|G|2308
6DNC|1|B|A|2309
6DNC|1|B|C|2310
6DNC|1|B|A|2311
6DNC|1|B|U|2312
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L5
Coloring options: