HL_6DZI_049

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

6DZI|1|A|A|1997, 6DZI|1|A|C|1998, 6DZI|1|A|U|1999, 6DZI|1|A|A|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_049 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1582

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6DZI|1|A|U|1994
6DZI|1|A|U|1995
6DZI|1|A|U|1996
6DZI|1|A|A|1997
6DZI|1|A|C|1998
6DZI|1|A|U|1999
6DZI|1|A|A|2000
6DZI|1|A|A|2001
6DZI|1|A|A|2002
6DZI|1|A|A|2003
6DZI|1|A|A|2004

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34