HL_6DZI_070

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6DZI|1|A|G|2975, 6DZI|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DZI_070 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1542

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6DZI|1|A|C|2969
6DZI|1|A|U|2970
6DZI|1|A|G|2971
6DZI|1|A|A|2972
6DZI|1|A|A|2973
6DZI|1|A|A|2974
6DZI|1|A|G|2975
6DZI|1|A|C|2976
6DZI|1|A|A|2977
6DZI|1|A|U|2978
6DZI|1|A|C|2979
6DZI|1|A|U|2980
6DZI|1|A|A|2981
6DZI|1|A|A|2982
6DZI|1|A|G|2983

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36