HL_6DZP_049
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- UUUACUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6DZP|1|A|A|1997, 6DZP|1|A|C|1998, 6DZP|1|A|U|1999, 6DZP|1|A|A|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DZP_049 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.1582
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6DZP|1|A|U|1994
6DZP|1|A|U|1995
6DZP|1|A|U|1996
6DZP|1|A|A|1997
6DZP|1|A|C|1998
6DZP|1|A|U|1999
6DZP|1|A|A|2000
6DZP|1|A|A|2001
6DZP|1|A|A|2002
6DZP|1|A|A|2003
6DZP|1|A|A|2004
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
Coloring options: