HL_6E80_001

3D structure

PDB id

6E80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Corn aptamer in unliganded state

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGGAGGUC

Length

10 nucleotides

Bulged bases

6E80|1|A|A|11||||18_655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6E80_001 not in the Motif Atlas

Geometric match to HL_5BJO_001

Geometric discrepancy: 0.3925

The information below is about HL_5BJO_001

Detailed Annotation

G-quadruplex fragment

Broad Annotation

No text annotation

Motif group

HL_57863.1

Basepair signature

cWW-F-F-cWH-cWH-F

Number of instances in this motif group

2

Unit IDs

6E80|1|A|G|9||||18_655
6E80|1|A|A|10||||18_655
6E80|1|A|A|11||||18_655
6E80|1|A|G|12||||18_655
6E80|1|A|G|13||||18_655
6E80|1|A|A|14||||18_655
6E80|1|A|G|15||||18_655
6E80|1|A|G|16||||18_655
6E80|1|A|U|17||||18_655
6E80|1|A|C|18||||18_655

Current chains

Chain A

RNA (36-MER)

Nearby chains