HL_6E8T_002
3D structure
- PDB id
- 6E8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGAAGGUUUGGUAUGUGGUAUAU
- Length
- 24 nucleotides
- Bulged bases
- 6E8T|1|B|A|10, 6E8T|1|B|U|15
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6E8T_002 not in the Motif Atlas
- Geometric match to HL_6E8S_001
- Geometric discrepancy: 0.1157
- The information below is about HL_6E8S_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35354.1
- Basepair signature
- cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
- Number of instances in this motif group
- 1
Unit IDs
6E8T|1|B|A|7
6E8T|1|B|G|8
6E8T|1|B|G|9
6E8T|1|B|A|10
6E8T|1|B|A|11
6E8T|1|B|G|12
6E8T|1|B|G|13
6E8T|1|B|U|14
6E8T|1|B|U|15
6E8T|1|B|U|16
6E8T|1|B|G|17
6E8T|1|B|G|18
6E8T|1|B|U|19
6E8T|1|B|A|20
6E8T|1|B|U|21
6E8T|1|B|G|22
6E8T|1|B|U|23
6E8T|1|B|G|24
6E8T|1|B|G|25
6E8T|1|B|U|26
6E8T|1|B|A|27
6E8T|1|B|U|28
6E8T|1|B|A|29
6E8T|1|B|U|30
Current chains
- Chain B
- RNA (35-MER)
Nearby chains
- Chain A
- RNA (35-MER)
- Chain C
- RNA (35-MER)
Coloring options: