HL_6EK0_026

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

6EK0|1|L5|C|1676, 6EK0|1|L5|C|1678, 6EK0|1|L5|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0947

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6EK0|1|L5|C|1675
6EK0|1|L5|C|1676
6EK0|1|L5|PSU|1677
6EK0|1|L5|C|1678
6EK0|1|L5|A|1679
6EK0|1|L5|G|1680

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a