HL_6EK0_059
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 6EK0|1|L5|A|4214, 6EK0|1|L5|C|4221
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EK0_059 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1122
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6EK0|1|L5|U|4210
6EK0|1|L5|C|4211
6EK0|1|L5|A|4212
6EK0|1|L5|A|4213
6EK0|1|L5|A|4214
6EK0|1|L5|C|4215
6EK0|1|L5|G|4216
6EK0|1|L5|G|4217
6EK0|1|L5|U|4218
6EK0|1|L5|A|4219
6EK0|1|L5|6MZ|4220
6EK0|1|L5|C|4221
6EK0|1|L5|G|4222
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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