HL_6EK0_081

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6EK0|1|L8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_081 not in the Motif Atlas

Geometric match to HL_8Y0B_001

Geometric discrepancy: 0.1649

The information below is about HL_8Y0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6EK0|1|L8|G|121
6EK0|1|L8|G|122
6EK0|1|L8|U|123
6EK0|1|L8|U|124
6EK0|1|L8|C|125
6EK0|1|L8|C|126
6EK0|1|L8|U|127
6EK0|1|L8|C|128
6EK0|1|L8|C|129

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a